Scaffold Ga0326746_014195

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326746_014195

Scaffold Ga0326746_014195

Overview

Basic Information
Taxon OID	3300034655 Open in IMG/M
Scaffold ID	Ga0326746_014195 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	765
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	14.8216	Long. (^o)	-44.9298	Alt. (m)		Depth (m)	2800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000930	Metagenome / Metatranscriptome	830	Y
F001487	Metagenome	686	Y
F032040	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326746_014195_291_614	F000930	GAGG	MYKVIRWQTDGTEEVWEAPKKPTLDQLYKLIGCSTVERQSGYDKDISNRTFDMWMDEESKCKAPEFIKKNERATSAWITWMARTGHKCMHDDFIAGNTVVCKKIGAA
Ga0326746_014195_2_118	F001487	AGGA	MKKFTIEVSHASPAQLATIALDLKIMSNGWEKHGPRIVI
Ga0326746_014195_615_764	F032040	N/A	NVYGNERIYPVCQDSIIFSYIAGTKTFCSITIANIKKLGYKFETQKEEI

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