NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326746_017771

Scaffold Ga0326746_017771


Overview

Basic Information
Taxon OID3300034655 Open in IMG/M
Scaffold IDGa0326746_017771 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)699
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.8216Long. (o)-44.9298Alt. (m)Depth (m)2800
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006447Metagenome / Metatranscriptome373Y

Sequences

Protein IDFamilyRBSSequence
Ga0326746_017771_1_675F006447N/AGEAEYQVTAEGLQTMGKKNPDYPDGTESQTLSIRLADAARVHTMRITDTHLGRAGITRALDISPLSAAVTGTTAYLFVGNLTITDSSFPTFQMETSEVANLVAGMKCDGNTMAATVTNTVSDQVLTSERLSSEYIVGPDAVVDRIQIHITGTSGAYVENLILDGLKAWNGQMFLSRLKVGTLTIGSTNLIGDGSGVDSASCNFDSSVLARNITNTIQDRPIKVQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.