NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326746_034243

Scaffold Ga0326746_034243


Overview

Basic Information
Taxon OID3300034655 Open in IMG/M
Scaffold IDGa0326746_034243 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.8216Long. (o)-44.9298Alt. (m)Depth (m)2800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036935Metagenome169Y
F103088Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0326746_034243_154_384F036935AGGAGMHRDTNKIIGNEHPVAGRVEAKKINLAKPLAKRSDWQEIENLPGTTIREKFQKKLGVEVDPALTFKKLEESIKYKI
Ga0326746_034243_1_141F103088N/AGRDAQLADRDYQRKLKLLKTDYGTHADYMRSDTIAESIATNVGVAS

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