NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326748_002102

Scaffold Ga0326748_002102


Overview

Basic Information
Taxon OID3300034656 Open in IMG/M
Scaffold IDGa0326748_002102 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2618
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.3325Long. (o)-44.9106Alt. (m)Depth (m)2477
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029902Metagenome187Y
F060347Metagenome133Y
F073413Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0326748_002102_1579_1977F029902AGGAMASYRVREGSITAADSFTNLGSLYGQSTTTSVQVPAGANAIVGMIVSVSHDSATNGAATFAVQLTGDGLTEQQTMTVGSAGVDGTPASNGATNPPFKCDVAIPVTASNQISIAGAMDTDIGTAQMSVCLIFA
Ga0326748_002102_2306_2554F073413GGAGMGRKPGPPKNTKVFRISPDDDVKIDDILKYWQANRGFYNVKTYTRSDVVGQAIRQYWLQQKAKHETDGKYCGICHNPTRRQE
Ga0326748_002102_981_1568F060347AGGMARKRKAYAPFSLTSEAGVAQTPLEGYIDVDQQIYPTVNTGTVNENGKWSGVKSNDVEFIEFTKHVVVADGGETLSPDTGTKNFIDMTGFKNLFIAIKPTRAGNVAVTAVMGPDTNRFANLEPLNANSTLRGRAMNMASIRADELFNDPAEALTADVWNLIWVQEVLQDQKNMQIRVVNNSGGESTMEVAFMRTV
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