Scaffold Ga0326748_011352

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326748_011352

Scaffold Ga0326748_011352

Overview

Basic Information
Taxon OID	3300034656 Open in IMG/M
Scaffold ID	Ga0326748_011352 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1156
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	13.3325	Long. (^o)	-44.9106	Alt. (m)		Depth (m)	2477
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F031891	Metagenome / Metatranscriptome	181	N
F064236	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326748_011352_1_255	F031891	GAG	LASELIPPEIVPIVWFACISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLISNAPRILHEIDKQIAEQKASGVS
Ga0326748_011352_245_982	F000704	N/A	VAKMPHVNGELQPSNVKSISVYDVANYGTDLFLPITDVGLTETALTFSTATVTRDTSNSNQPLDSFPRVYSDTDSGLLLNEGDNTIYNQTYSFSPDMTAVIYKLSLQFCACLTVSSYSSGTYNLGSLHIKITERSTNDSLLYENTFTSNAGDRTSTGTDIHWFTQDIVETIKVRKGNPIDIQLDLITTAGSGTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYSKQRVSLLGQ
Ga0326748_011352_986_1156	F064236	N/A	GSNANAVTGGDGLMKYEMPRGQGIPLAENVTVTNFYTNRDLRTGASNFINFVRYTK

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