Scaffold Ga0326751_003256

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326751_003256

Scaffold Ga0326751_003256

Overview

Basic Information
Taxon OID	3300034658 Open in IMG/M
Scaffold ID	Ga0326751_003256 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 524_CTD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2829
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	13.5136	Long. (^o)	-44.9626	Alt. (m)		Depth (m)	2427
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003617	Metagenome / Metatranscriptome	477	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326751_003256_1_525	F003617	N/A	GDSGLLLNEGNDTAFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSLGGLHIKITERSTNARLLYENTFQSGAATLGATGTQMHWFTQDIVETIKINKGNPVDIQLDLVTVVTGSNTRQEGYAPVAPLLKTAVMKPFFESGMSLHLHPDLSHADGVFKYKKDRVSMLGQ

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