NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314780_070942

Scaffold Ga0314780_070942


Overview

Basic Information
Taxon OID3300034659 Open in IMG/M
Scaffold IDGa0314780_070942 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)742
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001633Metagenome / Metatranscriptome660Y
F053640Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0314780_070942_1_240F001633N/APDATLRGMRMSRSHGGTVLTVTGRDLSSEASAPGSDTPCRERLAGRGTDTPATFTFSRRHLYREDGICLWLIVGLALRV
Ga0314780_070942_245_742F053640N/AEQSKRSGLKDVAESTAGIIPGDRGKVGDNWCRPPLQWRKSGARHLSPVPLTGVVSGQFTHELGTELQGAIRNRVEQSQACGKFRTACRRSHPRGFWLLLRRPERSHGSRRDDPAKRPSSPHESGAQRNRDRGERADLGKVRQPPQLGRSRKAGSPRCKSEMQPER
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