NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314787_013824

Scaffold Ga0314787_013824


Overview

Basic Information
Taxon OID3300034665 Open in IMG/M
Scaffold IDGa0314787_013824 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R4 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1085
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002256Metagenome / Metatranscriptome577Y

Sequences

Protein IDFamilyRBSSequence
Ga0314787_013824_1_1083F002256N/APITTKPEDIHLRRVVSETEELVASFSGRETFEQFKFSLRNLIMKIQENENLQSYLTELKYFILNAKSEEELRSKEFKEKSKDLAKRGRFLMREIKDEDLNPFLQAADEMIENIKNDEFLQLLRQQAGIVKSDLSYVDSEGMVQVDTDMLSKLQKTLLPELAEALKYIPVPRIYSCDENREFWLDKIVLCSYDIIPENIRFHLETDSELSFTDIELKETHTHLVIVLNRLLTELKDVEFYYKKKTFPELEDSGRVTFRVTGNGANLRLTYNVVQKPEDQFPRINEGKAFFDISGLEIEFDTKTLKHPVLVPMLGQMFKQQIKQQIEDQVEKSLTGWMNKLGDMIASSITETNRPFVSGFEA
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