NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314794_087766

Scaffold Ga0314794_087766


Overview

Basic Information
Taxon OID3300034669 Open in IMG/M
Scaffold IDGa0314794_087766 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014854Metagenome / Metatranscriptome259Y
F023129Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0314794_087766_2_436F014854N/AELRWTAVIERKSLVVSRIIPGNWGKVEPGWLARPLQERIARFGGGGRIHQFLWSRSHAVSYAKRNLAARSDKKPLRVGSSSSGRFRAWTNRSYPEGKWLLLCISTGRVTLAGSINRLEPPNESRRKVDKGSTRAGKITQTGQVA
Ga0314794_087766_486_647F023129N/AMKGNLRVKRRDPWHRANAWPKAVADPVLSGEDAELKSQPCLDLVRKPVAQPPAQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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