NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314801_020121

Scaffold Ga0314801_020121


Overview

Basic Information
Taxon OID3300034676 Open in IMG/M
Scaffold IDGa0314801_020121 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1131
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005884Metagenome / Metatranscriptome387Y
F022447Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0314801_020121_2_244F005884N/ADDDPLFYTLAKGTALMNEPTQDLIVSELRRHVRASLADVTQVLGLQFASLIPQEIQRMKASGLVVYDEPLGLSSLLSLPR
Ga0314801_020121_414_680F022447AGAAGGMSWHRVIIKHSTDAHLSAQGLMIPFVQQYKEAGAPEGVAVYISRDDGGDRTYYFSSTASSLAKDLLYTFHATRCFAEPNLETFRKIRL

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