NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310147_001095

Scaffold Ga0310147_001095


Overview

Basic Information
Taxon OID3300034683 Open in IMG/M
Scaffold IDGa0310147_001095 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - K-7-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25127
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.812Long. (o)-98.262Alt. (m)Depth (m)2943
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F033769Metagenome / Metatranscriptome176N
F082560Metagenome113N
F103496Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0310147_001095_2744_3097F022008GAGGMTLSEIEMLQSALNELSKQLQTLSDENRSSFGHIYDRLTRIETQMTERECRFKKYEKALENHEVRIRTVEGELGTLRDVPERLWRVSMSNSKLTGMIAAAGGMGGLVATLISKILGE
Ga0310147_001095_3099_3323F103496AGGMPLDDRIRKLPLTKLIALYFTVFTCVLIVLDVTTLCPLTDKSADLLKWLGSTIIVGYFGKSAYEHKMNTTSGVK
Ga0310147_001095_342_611F033769AGGAGGMSAINCGVKTATYTPSTVGVAVGRKYLRLTNESLDMRCRAGVSNISSTAGIIIEPGQTVEFRPLPSENREIYVMSEGKAVKLAYYEVIV
Ga0310147_001095_4971_5363F082560GGAGGMTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEANAWVVEVKVPNAKPRVPKELRERLPKEMREWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGSNIGGKHYGGFKRTQ
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Biomedical Sciences Research Center "Alexander Fleming"
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