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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034696 Open in IMG/M |
| Scaffold ID | Ga0370516_003832 Open in IMG/M |
| Source Dataset Name | Hot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6580 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5324 | Long. (o) | -110.7974 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007033 | Metagenome / Metatranscriptome | 359 | Y |
| F023603 | Metagenome / Metatranscriptome | 209 | N |
| F038584 | Metagenome / Metatranscriptome | 165 | Y |
| F044249 | Metagenome / Metatranscriptome | 154 | N |
| F068874 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0370516_003832_1116_1922 | F068874 | N/A | VFGRLRRILRFYERVELPDVPAQAQALSYGGRTIVSYPPSPAWAVREPLWLGRRGLGIYAPSTAKMKRKLGLPDREIVLFQTGKLYASIQVLNMKKYYLIRVRRDKLFYIIRRFPVERWLRVDASAVRAGIGKAILAALLGCAPLKKNKAVQSVEVAVRREEVVAHETLRLTTLLNDTIYLRNERLVIHYDTIHQKLRIEQVRPVVVVRDSVIRWNAVVQAPSWVAEKQGEEGMSWWKRWGRGVFALILGLGFLAFVGYLWLKALRIG |
| Ga0370516_003832_1926_2633 | F007033 | N/A | LITPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVVKPPTEWGINIEQFRCVSRLGVFLIDDAGVVCGRRVSLIKAAPIPIEPGTVQVRLLFPSDTTITKYEFSFDFAQSLMDFELVPVFADAGLLNYTPGIAARLTVRWRPPALIASVYALYSRGTGDFYIPITGLAAYLELRNNANTLITANFTEVSPGIYESDPLTLSPSGNPYTIRVGASTPADAFDYTTAVAQFNV |
| Ga0370516_003832_3377_3772 | F044249 | GAGG | MTKREAILALLGASLTVVAQKYAMVLAALIVLGALANFLGWLHAMISEEGCKPAKVLQGTARLVFYMVFYVVLLVALEQVASYLIPPLLSVAILYEASLALKKAVQLNIIPAGLVRQLTKVFHREPSEKAS |
| Ga0370516_003832_3954_5009 | F038584 | N/A | MTEEIKQIQKAAEELTATLHATAATEEETKTLDAISKAAAHIRQQLRDRMPNAGTRIKISELRAARRLMRRYVQKTTVGTNLPREYIGEAFYVIRQPVIEFIQDYLRTETLEVLSEITQVRLNPFTGSPSTVGEGGVKPTMSTTPQRVNSNYQKISFTDVITDEVLLAYPNIVDFLIWHGAYQLEVTLHNALLTVLASVASAATLPTGITSPQVADLLIYMRAFHDQRSAISRRGEWIANIAIVPFPYYWTLVFGALKSTMGEYLQLDRQLQGLSLIPAGTTQTDPTIVLNENELEVFFLGDITVNFERVVDAASDTNVRRLSMDLFYAPLPHAGHPVIVANTQNAINSMA |
| Ga0370516_003832_5850_6458 | F023603 | N/A | MLYTTEDFVGQYRLDSNAITQADYQRAIDEHERALLEYFFELDSIEKIYAALPASPPAVGVRNVMRDLALPFIFGRIKMGVGSSMAGEPNTQGYTRIGYTPYLAWRGHETLRRLMRFAPFVIQTELLAPSATVPYPNPIPQAPDFVAVGDPVRAYTTTGEVQTSVVSVTATDITLGASLPAGPVRLIVENLRIRVSRAYLTF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |