NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334948_000580

Scaffold Ga0334948_000580


Overview

Basic Information
Taxon OID3300034760 Open in IMG/M
Scaffold IDGa0334948_000580 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 44SMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15017
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F101835Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0334948_000580_1006_1479F101835GGAGGMSCRFETNVLRAAHDDEWSDSLRRHLLECDDCVATAAVAPWMSRFAKISDRDHPLPDPQIVWLKAKVLQGTVDAARVARPMTIIQLFAYLIVAGGWAVLLTWKWDAVTTWLRGFTPTGLVRNVALGGDSLSLWFFAFVFILASTTVMLAMHTIMAEE
Ga0334948_000580_6576_7088F002324GGAGGMGEIRLFQICYEGDLTAEVSHVMRRLGADANFDQSWQVFLPEGRHSAALVRYLRSQLGSDARMLVACTQFTTTRDFLLVRHSLTPGADYSELHDALARLGTVVELPFESTFVIQSDDRTDVRTLGAALGELCPDESLMVTGISHDWAYCNSGQSRMFVADALEEAQFKAF
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