NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325423_020634

Scaffold Ga0325423_020634


Overview

Basic Information
Taxon OID3300034778 Open in IMG/M
Scaffold IDGa0325423_020634 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5678
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016345Metagenome247N
F052698Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0325423_020634_312_476F052698N/AMRQFPITFIIEVCSNYDVINDVFGRQEDKNCHQVKMWPPIHQLVNKSIVPNFGL
Ga0325423_020634_727_978F016345N/AMFQFGLHQHLFSKFGHLFILSISILQLINQFFHLCDRPAFKMNTYHKLKISYIIRYVIIKHALVKELLILQVQNQVQNDDIKP

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