NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325423_037992

Scaffold Ga0325423_037992


Overview

Basic Information
Taxon OID3300034778 Open in IMG/M
Scaffold IDGa0325423_037992 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3259
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021024Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0325423_037992_2177_2416F021024AGAAGMIFGSLGPSIPQWFWASNSLSTLKISSSAVELVFEDDFGNSRYSVFVNCFKAISSLCALKMTASAVELGLLDDFWVPWS
Ga0325423_037992_247_486F021024N/AMIFGSLGPSFPQRFWASNSLRTLKISSSVIEQVFEDDFGNSRYSVFVNCFRAINSLCALKMSASAEELGFLDDFWVPGS
Ga0325423_037992_2820_3059F021024N/AMIFGSLGPSFPQRFWASNSLSTMKISSSAVEQVFEDDFGNSRYSVFVNCFRAISSLCALKMTASAVELGLLYDFWVPWS
Ga0325423_037992_3034_3258F021024N/ALVLVFLNVFKASNSLRTLKISSSAVEQVFEDDFGNSRYSVFVNSFRAISSLCALKMSASAEELGFLDDFWVPGS
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