NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334935_000763

Scaffold Ga0334935_000763


Overview

Basic Information
Taxon OID3300034781 Open in IMG/M
Scaffold IDGa0334935_000763 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 31SMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12692
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F101835Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0334935_000763_11061_11573F002324GGAGGMGEVRLFQICYEGELTVEVSHVMRRLGAEPSFDQSWQVFLPEGRHAAPLVRYVRAQLAPEARVLVACAQFTTMRDFLLVRHSLTPGADYSELHDALERLGNVIPLPFESTFIIQSDDRTDVRTLGAALSELCPDESLMVTGVSHDWAYCDSGISRMFVGDALEEAQFRAF
Ga0334935_000763_6205_6681F101835GGAGGMSEACRFEPNVLRAVREDRFTDSLRAHVADCDHCAAAMSVEPWLAEFSRIDPREHMLPDPSVLWLKAKLLQNSADVRRVTRPMDAAQLIAYVVVAGGWAAMLTWRWSAVEEWLHGFTPDTLVTNVARAESLSVSFFAILFVLASMTVMLAMHTILVED
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.