NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334935_001473

Scaffold Ga0334935_001473


Overview

Basic Information
Taxon OID3300034781 Open in IMG/M
Scaffold IDGa0334935_001473 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 31SMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8026
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334935_001473_4278_4904F092677GAGGMRVSPLFFAGLALLGTACNANDPQPDHQAEWRDVLRHKPAAVAPGASTTQKQVYADSVRAFVAKHPDHGRGQQVWQRLQLEFAYDLSAVGRYQDAIRVYRAVLAKHPESEPARRGLALAADRLAVTRDKLLLLEKGMSHRQVANVLGKPIPGWSMKQRRAGTSFEAWYYRTRTGEVAGVYFRDGKVFAAEENSSAQLARISDSSRDAR
Ga0334935_001473_6036_6341F002548GAGMPKFEYEAHTETDSAELFERRRVRRVRMIAELTLNLISSDRTSSHREARCLVDCARKAILELVPGFQLRYERIVRPHFDRVLQQRWPEEELRYCDPFETVN
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