Scaffold Ga0373573_0004415

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0373573_0004415

Scaffold Ga0373573_0004415

Overview

Basic Information
Taxon OID	3300034782 Open in IMG/M
Scaffold ID	Ga0373573_0004415 Open in IMG/M
Source Dataset Name	Sediment microbial communities from coastal wetland in Texas, United States - D0606M02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3637
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Coastal Wetland In Texas, United States

Source Dataset Sampling Location
Location Name	USA: Texas
Coordinates	Lat. (^o)	27.8962	Long. (^o)	-97.0386	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042907	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373573_0004415_2137_2397	F042907	GGAG	MTDEMRVEAEEKLFNDLRDEPCIVCGEPYLYVMGSYAPEEPKRSGRREEKAPVLYYTLCRTCFNNGRIPTALIESAYKSKFGQKAA

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