Scaffold Ga0373573_0019016

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0373573_0019016

Scaffold Ga0373573_0019016

Overview

Basic Information
Taxon OID	3300034782 Open in IMG/M
Scaffold ID	Ga0373573_0019016 Open in IMG/M
Source Dataset Name	Sediment microbial communities from coastal wetland in Texas, United States - D0606M02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1777
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Coastal Wetland In Texas, United States

Source Dataset Sampling Location
Location Name	USA: Texas
Coordinates	Lat. (^o)	27.8962	Long. (^o)	-97.0386	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048675	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373573_0019016_1369_1746	F048675	N/A	MNNSEKHMDSNEVLFSESYAAAQSLKNAWTRLASTYGCMKIVLYREMLTIKPHWFAKWLISPLALDLCHEIPITNIIGAKEMGKWFSYGKVELHFVTKDGESRRILLYMKKYHKFLDTVKNAIYQ

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