NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373573_0060194

Scaffold Ga0373573_0060194


Overview

Basic Information
Taxon OID3300034782 Open in IMG/M
Scaffold IDGa0373573_0060194 Open in IMG/M
Source Dataset NameSediment microbial communities from coastal wetland in Texas, United States - D0606M02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1056
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Coastal Wetland In Texas, United States

Source Dataset Sampling Location
Location NameUSA: Texas
CoordinatesLat. (o)27.8962Long. (o)-97.0386Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048675Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0373573_0060194_312_680F048675N/AMEEHMDSNEVLFCEHYAAAQSLKSFWTRLASTYGCMMIVLTPNMLIIKPHWFAKWLLSLLRLDLCHEIPFTRIRGVIEKGKWSSYGKVELHFQTVEGKDQNLLLYMKQYHDFIDKIKNSIHR

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