NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373950_0002259

Scaffold Ga0373950_0002259


Overview

Basic Information
Taxon OID3300034818 Open in IMG/M
Scaffold IDGa0373950_0002259 Open in IMG/M
Source Dataset NamePopulus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2635
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia, United States
CoordinatesLat. (o)39.6589Long. (o)-79.9058Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006605Metagenome / Metatranscriptome369Y

Sequences

Protein IDFamilyRBSSequence
Ga0373950_0002259_1873_2394F006605N/AMRRLVWLTALVLALAAPAMAVAVVGSGQDDGTLSVKAGVGKVYLNFNGSAVGRVHDGSIRVNDLVAADGLGFEFSNCDVVRDQSDTTISKNDTIKVCRGDNIRFRAIGGNYKIAISGAGINLSAVGHGTTSLNGAGDDPNVFGPDGTYSLNDGPYKSLPNLLTSFTLAGPSGQ
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