NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373958_0020023

Scaffold Ga0373958_0020023


Overview

Basic Information
Taxon OID3300034819 Open in IMG/M
Scaffold IDGa0373958_0020023 Open in IMG/M
Source Dataset NamePopulus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1228
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia, United States
CoordinatesLat. (o)39.6589Long. (o)-79.9058Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101732Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0373958_0020023_318_863F101732GGAMRVKRTAHFFGCCVLAFAFAGAAAPAGAQPLGTPAVEIGAGLQFLHIPGETYPFGWNLDLSGPVGDHPVVRWVGEGGYARANPLPVETLSFYHFGAGVRLMPANRHRPAPFFQLLGGVAYSKNQATEVGLWGPMVQPGVGVSVPISRYLNIVGQGDYRMAIFSGQVDNEFRFSAGARFML
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