Basic Information | |
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Taxon OID | 7000000032 Open in IMG/M |
Scaffold ID | SRS024132_Baylor_scaffold_2126 Open in IMG/M |
Source Dataset Name | Human stool microbial communities from NIH, USA - visit 2 of subject 159207311 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 132851 |
Total Scaffold Genes | 147 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F074964 | Metagenome | 119 | N |
F090484 | Metagenome | 108 | N |
F099406 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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SRS024132_Baylor_scaffold_2126__gene_4074 | F074964 | N/A | MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENGEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ |
SRS024132_Baylor_scaffold_2126__gene_4192 | F099406 | N/A | MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASKETKSVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFPRTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFSDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATDLSMAVSAEDAGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA |
SRS024132_Baylor_scaffold_2126__gene_4211 | F090484 | N/A | MDLPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDPLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVSVAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKTGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIKSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL |
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