NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C3512083

Scaffold C3512083


Overview

Basic Information
Taxon OID7000000125 Open in IMG/M
Scaffold IDC3512083 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 764325968
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1255
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103433Metagenome101N

Sequences

Protein IDFamilyRBSSequence
C3512083__gene_177541F103433N/AKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSSNDASKIPAYIKRVSIFLAALTAFLLALVVQKIRALFGRITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYMLIGLWADYVVKRTVKYE
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