NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS045715_LANL_scaffold_108822

Scaffold SRS045715_LANL_scaffold_108822


Overview

Basic Information
Taxon OID7000000144 Open in IMG/M
Scaffold IDSRS045715_LANL_scaffold_108822 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 246515023
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17628
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092229Metagenome107N

Sequences

Protein IDFamilyRBSSequence
SRS045715_LANL_scaffold_108822__gene_159597F092229AGGAGMTNEKYRFKHIPEVVLKNIRFIKDNNIDVGNGKDMLECMMNVNSVVRTKIYEDYEFAKDVAERRFGSTIEDLDMVTILQKCTTRPYNSILNNIYFRYFNSKLIDDLFKLAESPKILDLAIEYKCDYYAVNTAKTAVRRYIDDIYYNKFAIDSTIITSSRSLNDPQVNAVKSAEFTYELLMASRAEEFTPEIVRNIFIKYGLKPNPSRNVYNRINNNLNLFYYIEDYLEEYREEGKFIYGTKEYKISKDLRRLPLMLILTQLTRKNNSGYILNSNLELVKG
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