NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS052876_LANL_scaffold_15837

Scaffold SRS052876_LANL_scaffold_15837


Overview

Basic Information
Taxon OID7000000274 Open in IMG/M
Scaffold IDSRS052876_LANL_scaffold_15837 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 737052003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11447
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040149Metagenome162N
F055792Metagenome138N

Sequences

Protein IDFamilyRBSSequence
SRS052876_LANL_scaffold_15837__gene_17870F055792GAGGMEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAIEAVALPHVARLDEGIPLQRIGSLRDLLVTPDVSQADDL
SRS052876_LANL_scaffold_15837__gene_17871F040149GAGGVADEGAKEFRWKVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWRHDSEDAIDYFIYDVFVPKGHTLTAVRERETVVVQLLNIHRMF
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