NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS049959_WUGC_scaffold_1828

Scaffold SRS049959_WUGC_scaffold_1828


Overview

Basic Information
Taxon OID7000000531 Open in IMG/M
Scaffold IDSRS049959_WUGC_scaffold_1828 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 1, subject 765701615
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19803
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050794Metagenome145N
F077313Metagenome117N

Sequences

Protein IDFamilyRBSSequence
SRS049959_WUGC_scaffold_1828__gene_2958F077313N/AMGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTRIGFDIQHPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTAIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKVKIGLKSVYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIIFRSMKEYGLTEEDIADAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYSTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVENPDVKLDMPELIDSNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
SRS049959_WUGC_scaffold_1828__gene_2962F050794AGGMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMREAEKLELDTDAIKAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG

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