NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS023346_LANL_scaffold_3627

Scaffold SRS023346_LANL_scaffold_3627


Overview

Basic Information
Taxon OID7000000540 Open in IMG/M
Scaffold IDSRS023346_LANL_scaffold_3627 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 1, subject 246515023
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)862
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080163Metagenome115N

Sequences

Protein IDFamilyRBSSequence
SRS023346_LANL_scaffold_3627__gene_7890F080163N/AMKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNLCDAKQFLESINDFDKILFVIITYMKTYFDFCKNYSKISLHVHLVQFDFTMSVLIQGFYNYTHRDLNFSTKLESEILDSEIELLQEKLDLIREELCKIMGIDLNLEKQGHEDNYVFNLNIDSDNQIGFFLQETEL
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