NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS058723_Baylor_scaffold_3323

Scaffold SRS058723_Baylor_scaffold_3323


Overview

Basic Information
Taxon OID7000000559 Open in IMG/M
Scaffold IDSRS058723_Baylor_scaffold_3323 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 2, subject 763820215
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2704
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083452Metagenome113N

Sequences

Protein IDFamilyRBSSequence
SRS058723_Baylor_scaffold_3323__gene_7621F083452N/AMQGYWIIDMSGRVKIKSKDKDKKPKIDVFKVIESRFKNMNELRDLIDTDPRKGLVRIRDGAGFREVERGGCLHQNYLNLLEEELGTKLSIDLIDKYVKRK

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