NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS019329_WUGC_scaffold_1147

Scaffold SRS019329_WUGC_scaffold_1147


Overview

Basic Information
Taxon OID7000000607 Open in IMG/M
Scaffold IDSRS019329_WUGC_scaffold_1147 Open in IMG/M
Source Dataset NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 765337473
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)730
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099454Metagenome103N

Sequences

Protein IDFamilyRBSSequence
SRS019329_WUGC_scaffold_1147__gene_564F099454AGGMKASKLLWAVVVALTFVLTSCDRVTDEPTIEGKINKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGILDPKSENYLTKKIDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK

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