Scaffold SRS047634_LANL_scaffold_140685

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS047634_LANL_scaffold_140685

Scaffold SRS047634_LANL_scaffold_140685

Overview

Basic Information
Taxon OID	7000000649 Open in IMG/M
Scaffold ID	SRS047634_LANL_scaffold_140685 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 160158126
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19689
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N
F095632	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
SRS047634_LANL_scaffold_140685__gene_199714	F095632	AGGA	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGIGSSVLGTYVGDKAGRQYAETLAETIDSLQTPSTN
SRS047634_LANL_scaffold_140685__gene_199734	F049707	AGGAG	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFAERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIHFQPKINSEGN

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