Scaffold SRS053854_LANL_scaffold_22380

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS053854_LANL_scaffold_22380

Scaffold SRS053854_LANL_scaffold_22380

Overview

Basic Information
Taxon OID	7000000687 Open in IMG/M
Scaffold ID	SRS053854_LANL_scaffold_22380 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 508703490
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9781
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067846	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
SRS053854_LANL_scaffold_22380__gene_29249	F067846	AGGAG	MESLQAQWERKTFDDYDRRCCAEDAYNEAVEREIECIEDDISNGDSDAICAFSEKMFDDDEFLKAVALGADYEEMRIKILTAMAEDRLEQLEEDYRKGFILND

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