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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2022920018 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045212 | Gp0051404 | Ga0026237 |
| Sample Name | Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 31835426 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → spring water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Yellowstone National Park, WY | |||||||
| Coordinates | Lat. (o) | 44.533365 | Long. (o) | -110.849887 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001564 | Metagenome / Metatranscriptome | 670 | Y |
| F003460 | Metagenome / Metatranscriptome | 485 | Y |
| F030445 | Metagenome / Metatranscriptome | 185 | N |
| F032293 | Metagenome / Metatranscriptome | 180 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| YNPsite16_CeleraDRAF_100998 | Not Available | 742 | Open in IMG/M |
| YNPsite16_CeleraDRAF_scf1119010769745 | All Organisms → cellular organisms → Bacteria | 1354 | Open in IMG/M |
| YNPsite16_CeleraDRAF_scf1119010770530 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253 | 1341 | Open in IMG/M |
| YNPsite16_CeleraDRAF_scf1119010775673 | All Organisms → cellular organisms → Bacteria | 1222 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| YNPsite16_CeleraDRAF_100998 | YNPsite16_CeleraDRAFT_451450 | F030445 | MLVAIARPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVVTQIGDELIVYCDQLSRTVWRGQIERIEEARDGSIVWHALGFGALQRDARISVVQNMYDMSRWTPVGSGFMSSSGYDSRGDLWEYEVVSTA |
| YNPsite16_CeleraDRAF_scf1119010769745 | YNPsite16_CeleraDRAFT_183830 | F032293 | MRVRQIGTLVFDADTNIVVDASNQDAPGVGFRADSLFNPQPFAAEIAFRRNTRQQALDAVNTLARELHSYAQRRQAGRFAVAGGATVLVEDATGGATLRAFLRDGSITLLGVEATATGVIARV |
| YNPsite16_CeleraDRAF_scf1119010770530 | YNPsite16_CeleraDRAFT_501730 | F003460 | MHDLQHAYEVLHEIIAPRGLYAESTLLLVVNLRRPSELRDVAVELVIRARAGGSPVWRANESLRVPGRMKLRSLAGALFGLFMRAAYDVEAQISLPGDDRPRSQGRARA |
| YNPsite16_CeleraDRAF_scf1119010775673 | YNPsite16_CeleraDRAFT_103570 | F001564 | PEKPSLRFLIHWALRREELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRALDLRAALKMGVRIGLDEIRADEYRAMLIVEEERERLDRERFEDRRP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |