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Sample 2029527000
2029527000: Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor - Inoculum 16S MiniPCR
Overview
Basic Information
IMG/M Taxon OID 2029527000 Open in IMG/M GOLD Reference Gs0045248 | Gp0051350 | Ga0026396 Sample Name Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor - Inoculum 16S MiniPCR Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? Y Use Policy Open
Dataset Contents
Total Genome Size 110687544 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria 2 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_30 1 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Green-Waste Compost Microbial Community At University Of California, Davis, Usa, From Solid State Bioreactor Type Engineered Taxonomy Engineered → Solid Waste → Grass → Composting → Bioreactor → Green-Waste Compost → Green-Waste Compost Microbial Community At University Of California, Davis, Usa, From Solid State Bioreactor
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
Location Information
Location University of California, Davis, USA Coordinates Lat. (o ) 38.796568 Long. (o ) -121.881912 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F031884 Metagenome / Metatranscriptome 181 Y F060713 Metagenome / Metatranscriptome 132 Y F070040 Metagenome / Metatranscriptome 123 Y F092819 Metagenome / Metatranscriptome 107 Y
