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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2029527004 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045516 | Gp0051574 | Ga0011058 |
| Sample Name | Atta cephalotes fungus garden (ACEF) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 40623338 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Atta Cephalotes Fungus Garden Microbial Communities From Gamboa, Panama |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Atta Cephalotes Fungus Garden → Atta Cephalotes Fungus Garden Microbial Communities From Gamboa, Panama |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Fungus → Fungus corpus |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gamboa, Panama | |||||||
| Coordinates | Lat. (o) | 9.1167 | Long. (o) | -79.7 | Alt. (m) | N/A | Depth (m) | .5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010740 | Metagenome | 300 | Y |
| F036993 | Metagenome | 169 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| ACEF_contig14626 | Not Available | 506 | Open in IMG/M |
| ACEF_F3GTV4A02F8DYE | Not Available | 512 | Open in IMG/M |
| ACEF_F3GTV4A02GG3OP | Not Available | 517 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| ACEF_contig14626 | ACEFG_315210 | F036993 | YPIKMYQGGTPHEPFFIAIDCRSQVIIGPNKKIVATHVVGELEVLV |
| ACEF_F3GTV4A02F8DYE | ACEFG_630550 | F010740 | MAFMDRKRNTDTAKNGYQIPMYQGGPPHEPYFIAIDNQDQIIIGPSKKIMAMHVVG |
| ACEF_F3GTV4A02GG3OP | ACEFG_569150 | F036993 | MLQEGPSYELFFIAINNRGQVIIGPNKKTVTVYVVEELKVLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |