NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2032320004

2032320004: Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2-



Overview

Basic Information
IMG/M Taxon OID2032320004 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0059646 | Gp0051399 | Ga0026226
Sample NameSoil microbial communities from sample at FACE Site 1 Maryland Estuary CO2-
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size189275844
Sequencing Scaffolds16
Novel Protein Genes16
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum1
All Organisms → cellular organisms → Bacteria7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Face And Otc Sites In Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationMaryland Wetland Ecosystem, MD
CoordinatesLat. (o)38.85Long. (o)-76.53333Alt. (m)N/ADepth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000708Metagenome / Metatranscriptome926Y
F003187Metagenome / Metatranscriptome502Y
F008318Metagenome / Metatranscriptome335Y
F013114Metagenome / Metatranscriptome274Y
F025511Metagenome / Metatranscriptome201Y
F031579Metagenome / Metatranscriptome182Y
F034932Metagenome / Metatranscriptome173Y
F036181Metagenome / Metatranscriptome170Y
F041174Metagenome / Metatranscriptome160Y
F045206Metagenome / Metatranscriptome153Y
F085675Metagenome / Metatranscriptome111Y
F086527Metagenome110Y
F090684Metagenome / Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
FACEMD_FWMYIUC02F478CAll Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis503Open in IMG/M
FACEMD_FWMYIUC02F73QIAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum525Open in IMG/M
FACEMD_FWMYIUC02FMUDLAll Organisms → cellular organisms → Bacteria508Open in IMG/M
FACEMD_FWMYIUC02G5VGSAll Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium529Open in IMG/M
FACEMD_FWMYIUC02GDDHMAll Organisms → cellular organisms → Bacteria513Open in IMG/M
FACEMD_FWMYIUC02GEEZ5All Organisms → cellular organisms → Bacteria540Open in IMG/M
FACEMD_FWMYIUC02GLW9PNot Available522Open in IMG/M
FACEMD_FWMYIUC02H4V4DAll Organisms → cellular organisms → Bacteria503Open in IMG/M
FACEMD_FWMYIUC02HCGA8All Organisms → cellular organisms → Bacteria520Open in IMG/M
FACEMD_FWMYIUC02HCTU3Not Available521Open in IMG/M
FACEMD_FWMYIUC02HDPAMAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium511Open in IMG/M
FACEMD_FWMYIUC02HOIX0All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium523Open in IMG/M
FACEMD_FWMYIUC02I4B1PAll Organisms → cellular organisms → Bacteria528Open in IMG/M
FACEMD_FWMYIUC02IMKO2Not Available523Open in IMG/M
FACEMD_FWMYIUC02J3Y00All Organisms → cellular organisms → Bacteria500Open in IMG/M
FACEMD_FWMYIUC02JWO1ENot Available525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
FACEMD_FWMYIUC02F478CFACEMDA_1824720F031579EDPIARLRPIQNTDRFELFYWSNVKERWTMFENLGRMKLMLESAHEIVENDPMFRVPRSR
FACEMD_FWMYIUC02F73QIFACEMDA_7776350F090684VTVAVADSRGVAAAYAGAAFRHARSDDGYHADCVRIVTEEQLRLLSGPPGLREAHAVMTEQSVGGSDS
FACEMD_FWMYIUC02FMUDLFACEMDA_5583170F000708MTKPDPTLVQIAARFTRHSVEKSGGAYLILDRPTANAIARLRPIPGTDRFELFYWSNLKGRWTTFGNLGRMRLMLETAHEIVEKDPMFHISRAR
FACEMD_FWMYIUC02G5VGSFACEMDA_1432310F008318MTEDDVFQQAINYIFTGQIAPNPKHQPEIVDRKTCVVVVPKPDINGYARYYLNRFKMDISRISKRYAGRRVFYELEVEGDDIIFESLKADKTTVEFGLRSVHISLPGNIDQTEKAIKLVLLSIVSLIN
FACEMD_FWMYIUC02GDDHMFACEMDA_2087630F034932MRRVRIESESNDLIAGFVAGVDWVNDSAVAVVDLDYRGPTAFVVLEDRDASGEDEVRRLTSDGIAGKE
FACEMD_FWMYIUC02GEEZ5FACEMDA_4689600F041174LDFFSDRNRSKVAVVVTADGRRVTVPLRDLQPQDVSLLGLLRSLLAGLEDLLGLLITGSRRENGGTRRNERH
FACEMD_FWMYIUC02GLW9PFACEMDA_2797810F003187MGGVIMKKILVIVCSAILALGVAGCAGKAPVGKGKAPVVHTKG
FACEMD_FWMYIUC02H4V4DFACEMDA_4108610F085675MTGPGGTGGRDLGAQRWGSEQEEINKMAQQERMAHEADRIHAEEAAEEGRSVAPKRPWWKFWAKG
FACEMD_FWMYIUC02HCGA8FACEMDA_1036720F036181VRAERIAEVQRQLAQGLARIDPHHRLMGRPVSYRVIDGETLEITFRDVAGIAEAEFSA
FACEMD_FWMYIUC02HCTU3FACEMDA_4216650F034932MRKIRIEGDSPDLMAGFVAGVEWVNDSAITVVGLDYGRQPAFVVLEDQDGTGEDEDLRLTVNGIEPKE
FACEMD_FWMYIUC02HDPAMFACEMDA_3525270F045206SRGQIIEEIPGDELDEHRIVEAIVRGPGLSKAGRSPLGVAMPTSASQGTT
FACEMD_FWMYIUC02HOIX0FACEMDA_6767880F013114DARAAGHPDVRLRRLDGVPELEGRRSRGRAGGELAAGDYVRVNVRAPRNASLADIERAVSSLVGDHGTERYKPTQPLYTFRGTLTAVGDSGVTLTVKGGNRRATRLLLGQSASQTFATGDQTIFLLWQGKVPTVIDLSKLTVGDRVVVHVRADQGSSLAQVEASAANHVGDREP
FACEMD_FWMYIUC02I4B1PFACEMDA_1409290F086527APEVYWPVADRSLRVVKTVRTQQVRRVQVIQSPLGKKQKTRQAVPQASTNYYATNLELGSIPPRFIAELGRSRWRVDTEVFQTLTTQAHLKQPSVHQSCALILLTMIRVLAYTLSLVFYHRQVLSHTRQTPPTFSEMARLLAYRFLPPRLDSS
FACEMD_FWMYIUC02IMKO2FACEMDA_8377540F025511MGILDSIRRLLGRADDAMTQADYAALDAVHHAEDRLDDATGGRYYDTVEKADEEAGEILDRLHLDNEPGGADEPAGTDDVTGASGSA
FACEMD_FWMYIUC02J3Y00FACEMDA_8271990F000708MTKPDPTLVQIAARFTRHSVEKSGGAYLILDRPTANAIARLRPIPGTDRFELFYWSNLKGRWTTFGNLGRMRLMLETAHEIVEKDPMFHIS
FACEMD_FWMYIUC02JWO1EFACEMDA_6410250F034932MRRIRIEGDSPDLIAGFVAGVEWVNDSAITVVDLDYSSRAAFVVLEDQDGTDDYEVLRLTLNSIEAKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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