NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2038011000

2038011000: Fungus garden microbial communities from Atta colombica in Panama - from dump top



Overview

Basic Information
IMG/M Taxon OID2038011000 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045310 | Gp0051594 | Ga0011020
Sample NameFungus garden microbial communities from Atta colombica in Panama - from dump top
Sequencing StatusPermanent Draft
Sequencing Center454 Life Sciences, DOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size465469652
Sequencing Scaffolds9
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFungus Garden Microbial Communities From Leaf-Cutting Ants In Gamboa, Panama
TypeHost-Associated
TaxonomyHost-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Fungus Garden → Fungus Garden Microbial Communities From Leaf-Cutting Ants In Gamboa, Panama

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Fungus → Fungus corpus

Location Information
LocationGamboa, Panama
CoordinatesLat. (o)9.1167Long. (o)-79.7Alt. (m)N/ADepth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000150Metagenome / Metatranscriptome1910Y
F000198Metagenome / Metatranscriptome1648Y
F002255Metagenome / Metatranscriptome578Y
F006745Metagenome365Y
F019500Metagenome / Metatranscriptome229Y
F023771Metagenome / Metatranscriptome208Y
F032964Metagenome / Metatranscriptome178Y
F055231Metagenome139N
F071942Metagenome / Metatranscriptome121Y
F073159Metagenome / Metatranscriptome120Y
F091073Metagenome108Y
F097652Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ACOD_contig00546All Organisms → cellular organisms → Bacteria93144Open in IMG/M
ACOD_F95O9CU02FK5Z3Not Available522Open in IMG/M
ACOD_F95O9CU02GV1XTAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria506Open in IMG/M
ACOD_FV90NF401AZYHWAll Organisms → cellular organisms → Bacteria → Proteobacteria505Open in IMG/M
ACOD_FV90NF401C6Z53All Organisms → cellular organisms → Bacteria500Open in IMG/M
ACOD_FV90NF401C7I92All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae532Open in IMG/M
ACOD_FV90NF401CAEQ5Not Available521Open in IMG/M
ACOD_FV90NF401DY7DUAll Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium502Open in IMG/M
ACOD_FV90NF401E2EUGAll Organisms → cellular organisms → Bacteria530Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ACOD_contig00546ACODT_19273620F071942MSKTSKPGEFRTPDLYYAAYLQTAGVGLLRTDREGSRVYFIFDTSLGNMEELKQAWINNTGKVAAQPYAFSIRSLKAICHMP
ACOD_F95O9CU01A2E6EACODT_4283730F000150RVEHDLSAGFCMSITTYLDDFDADLETKTVLRVALERTRVSLGLDKFANGIIARRIVELAKAGERNPDLLCEGAIEKLSGHLYGD
ACOD_F95O9CU02FK5Z3ACODT_10433390F006745MADGVAPHRRRPTSSAVLVYVIVLVALQLFLVTVAAEAFLSDDEGLAWATAAISVAMFGAAATFLRYLRP
ACOD_F95O9CU02GV1XTACODT_13649140F002255MKRLLLGLALAAAVAYALRDWFAAPQPHPSWEETDNDPEDMSLDLAQRAREAEGAQAAEESETPAT
ACOD_FV90NF401A9DY4ACODT_14959570F091073MDQALVIEREREDWTRLYHKMLKGLETMIDVQRMAKNIKKLAEEANTILTEVEGTILMASINN*TMNATSLTQISEDLRYLVQSDMDKRAFQIQRMLADKLDQYKGKDNKYVEDNIKEIQELYTNEEINQAQGTIENKEVILVRLY
ACOD_FV90NF401AZYHWACODT_7924670F055231LGALAATPAFANWWIVRSSDETCLVVDIEPTGKEKGITKIGKDSYPTAEQAEADVKRLCQSEAKPKRNP
ACOD_FV90NF401B4SIRACODT_3610280F000198LGFLKAHGYLDVSDPSQPASFAEPDLRLANRGGARISAAEIAAILERRRPIERALRVIGPHASLTAAANSVPWLPLRQLFEAFADIRGVGFAKMTKALHPQRPALIPMLDSVVRKYLKEDDPGAQAPFGERAIALVRGYKRDLDRNAVAVGAVRQELARRSYVLTEVRIL
ACOD_FV90NF401C6Z53ACODT_10400310F019500EPEYIHWNVNASPVNFETATFTVNSITVQEQLGAYEPLNRTNEFTVKFGVHF
ACOD_FV90NF401C7I92ACODT_18249320F097652MWKYTTRTVEEGPFAWNDLMVRYRMPRGISVQEMAPCEFEEIRFYAYTDELGATNLPPNPNQDTDFWPAPSAGLRFFRGGYEHIVDDETKACLISSGVADESNFEATSGFG
ACOD_FV90NF401CAEQ5ACODT_11352920F023771DPALEIVIPDGQQFHAELSEEKPIPAAGTVATRQGRRSAALVEQMSAVRKQTQQLLQRNQQLRHELSTVCLVSESIRVRASRLVSLARLAGSPADDVYRIANKPPRRSPPHLVVLPGG
ACOD_FV90NF401DY7DUACODT_9091130F073159MAARKKGAVRPGQGVMCNICGLNCGKGGALKKHVEGAHSVDYDAYKKCFYGTVKTILADSWDDTVSTSNGDTVVVHVLVRRFIQDPGPRGATRAVRKQSA
ACOD_FV90NF401E2EUGACODT_10644900F032964DAMQMAGMDVKISYNWNMKRIDLISEDVWGRGEILPLGFYTTDGRKIFEIRGASGGVATSDIFYMVLGTQTFVNNPRLVLILTILRFRRGYLG
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