Sample 2051223000

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 2051223000

2051223000: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10368

Overview

Basic Information
IMG/M Taxon OID	2051223000 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045401 \| Gp0051699 \| Ga0010938
Sample Name	Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10368
Sequencing Status	Permanent Draft
Sequencing Center	University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	39595538
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Orebro University Hospital, Sweden
Coordinates	Lat. (^o)	59.274717	Long. (^o)	15.230656	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
mc15a_MC15A_contig15655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp.	1678	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
mc15a_MC15A_contig15655	MC15A_contig15655_metagene_gene_3	F099269	VHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGS

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