Sample 2051223006

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 2051223006

2051223006: Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10374

Overview

Basic Information
IMG/M Taxon OID	2051223006 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045401 \| Gp0051702 \| Ga0011002
Sample Name	Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10374
Sequencing Status	Permanent Draft
Sequencing Center	University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	64033979
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] lactaris	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Orebro University Hospital, Sweden
Coordinates	Lat. (^o)	59.274717	Long. (^o)	15.230656	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059106	Metagenome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
mhc6a_MHC6A_contig48237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] lactaris	1206	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
mhc6a_MHC6A_contig48237	MHC6A_contig48237_metagene_gene_4	F059106	MHAIVWKIRVILLQTFVWIVDLKVRERLIEYLKKDIKYHRVIIGGLV

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