NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2075704000

2075704000: Bovine rumen microbial communities from Vernon, TX, USA, Sample 511



Overview

Basic Information
IMG/M Taxon OID2075704000 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046171 | Gp0051735 | Ga0011158
Sample NameBovine rumen microbial communities from Vernon, TX, USA, Sample 511
Sequencing StatusPermanent Draft
Sequencing CenterTexas A and M University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size615647036
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens1
Not Available2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBovine Rumen Microbial Communities From Vernon, Tx, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities From Vernon, Tx, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationVernon, Texas
CoordinatesLat. (o)34.154Long. (o)-99.264Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048702Metagenome / Metatranscriptome147Y
F059440Metagenome / Metatranscriptome134Y
F081939Metagenome / Metatranscriptome114N
F082888Metagenome113Y
F098660Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
RmDRAFT_ConsensusfromContig1116670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus flavefaciens3814Open in IMG/M
RmDRAFT_ConsensusfromContig1122983Not Available820Open in IMG/M
RmDRAFT_ConsensusfromContig1229778All Organisms → cellular organisms → Bacteria639Open in IMG/M
RmDRAFT_ConsensusfromContig1562657All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella3629Open in IMG/M
RmDRAFT_ConsensusfromContig232092All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae967Open in IMG/M
RmDRAFT_ConsensusfromContig236396_1967628Not Available648Open in IMG/M
RmDRAFT_ConsensusfromContig252730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium571Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
RmDRAFT_ConsensusfromContig1116670RmDRAFT_14917760F098660MEMTMAEKRDLIERITDLVKNDILNKEDRDDIYRVCLVACDRELAKLKEERDV
RmDRAFT_ConsensusfromContig1122983RmDRAFT_01201800F048702MDKRMNKKTGEELQQYLAWRRKGSSVPSKKGKGSYNRKDFKKGVA
RmDRAFT_ConsensusfromContig1229778RmDRAFT_09015000F059440MGKTRLEREAEFKAKIAELDEYVKKMNAKSNKTDEEVDEVISAMQLTNKYLRAIGASEEEMYDI
RmDRAFT_ConsensusfromContig1562657RmDRAFT_12645720F081939MAKKTLSKKEKVGMLADKLNEAIESCNFEPTEELDLFAEAVALLIAYWGKVSDWTPIEKASYVGYVTTTVMEKGLDVAIKDFDEYRKSLNTKFGN
RmDRAFT_ConsensusfromContig232092RmDRAFT_07324010F098660MAEKRNLLERIRQLALIDVLKKEDRDNIYRVCMVACDREMARLKEEK
RmDRAFT_ConsensusfromContig236396_1967628RmDRAFT_12712920F098660MDMTMAEKRNLLERIRQLALIDVLKKEDRDNIYRVCMVACDREMARLKEEK
RmDRAFT_ConsensusfromContig252730RmDRAFT_10895850F082888MSQIIEIIVENKKYQIEWALSEYFGELKGKKFMLNEVAADQIVMIKNLSETAKILLSAVAGAVIQYLIDNNCQISSIFENGYFIIKND
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