NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2088090021

2088090021: Sample MXFT-1



Overview

Basic Information
IMG/M Taxon OID2088090021 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063147 | Gp0051950 | Ga0011056
Sample NameSample MXFT-1
Sequencing StatusPermanent Draft
Sequencing CenterNational Research Council of Canada
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size75338853
Sequencing Scaffolds7
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota2
Not Available3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRumen Microbial Communities Of Musk Oxen From Alaska
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Unclassified → Unclassified → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationFairbanks, Alaska
CoordinatesLat. (o)64.880776Long. (o)-147.869984Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014928Metagenome / Metatranscriptome259Y
F015816Metagenome / Metatranscriptome252Y
F037527Metagenome / Metatranscriptome167Y
F045477Metagenome / Metatranscriptome152N
F050059Metagenome / Metatranscriptome145Y
F056234Metagenome / Metatranscriptome137Y
F076635Metagenome / Metatranscriptome118Y
F082003Metagenome / Metatranscriptome113Y
F100168Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
MXFT_Contig170859All Organisms → cellular organisms → Bacteria980Open in IMG/M
MXFT_Contig26372All Organisms → cellular organisms → Eukaryota600Open in IMG/M
MXFT_Contig3041Not Available703Open in IMG/M
MXFT_Contig35060All Organisms → cellular organisms → Eukaryota782Open in IMG/M
MXFT_Contig63124Not Available828Open in IMG/M
MXFT_Contig6727All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2918Open in IMG/M
MXFT_Contig73257Not Available574Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
MXFT_Contig170859MXFT_01184980F050059LGKASMVNHRYFVPRDGQRAVAATAWKESARPCPHSRRGLTPLGRLQKYPKIHVSTGEESSGSGPDSTQGFWPRYRRERNPERPPSNSHGDWPFLSPPGRVPEVPVVTREHLPQLEKIQEVLPCRRDGAYFR
MXFT_Contig26372MXFT_01243240F014928LEIQPVITTEVQPIIQKEITPVVHKQIQKIIHQEIQPVVIKRVQQIIHQEITPVVHREIQPIIQQEIQPVITKEIQPIIQREIIPVIHKEIQPVINQKIQPVITKEIQPIINRKIQPVIHKEIQPVIHENIQPVITTEIQPVITQKIQPVIHKEVQPVIHENIQPVITTEIQPVITQKSN
MXFT_Contig3041MXFT_01373380F056234MSYKPFKVREERKQKPEEEPYKIPFIGKSTYNRHYPDWGTSEPQGDKVPPPEEIIVPLRGIPNYKESYPRYDDKYYTNGEPLNFTKPTLKFDGELDPRTTYNEAFKPTDLGNKHYFPD
MXFT_Contig35060MXFT_01868530F037527MKILIKQNDMVKNHMKDFFKFINLEGKAYTELIERREELKAKYNAENQRVTAKKEKLYATGDVTKFELGTNEKGIDRERLMHDKPYAFEHICQNDTANLQKIYNQLGYANKMNMRELKKIIKEYCVRYVDNLKKFDEEFYPSINDLIGTWSNMQNFVMSANMPKMPAPAK
MXFT_Contig63124MXFT_00117800F015816FPNCGKSFLSQPALNNHKKTKHPELLEGQPKRGRGRPRKYPPKTIGDFESTKYDVFFNNPPRNAEEGKSIIVHNVVNQVFDFLYKGPNADKLFSHPHTWEENPILKNLNENAPVTDKPKQQRTCDEVFYEYLHNFKDKTNETYFTLLIKFVLLFRECYDISKNKDSKEEKKAVTDHMQPEGLPDLCNEFYGEFMDPNNFFGLDENDKNEIIRNNPTLLHLAIQE
MXFT_Contig6727MXFT_00583660F076635TKGLIMIKRGTKVRVIKMDDAGGGFGWQAKQLNGRIFTVRYMDATKQIHLEETGIALIPGVDQYEIVKENE
MXFT_Contig72473MXFT_01703830F082003MRVGPFGQVRPDVGTFVQGPPMYGPYGGIGGARVDVDGDGIPDMRVGPFGQVNPDVGTFVKGPPMYGAGMYPPAYY
MXFT_Contig73257MXFT_00720010F100168XPIPLCALPPTTSGLWGIVMCEMTLLCVSNPESPMKLLLIPYTVKAKIYPIILVLMFILVNYLEIDVEVISGVIYGFIYFYYLKTKLQISDTFVQKLETNNGFKWLSNFKGFISVTHISSGMPISITKVSSIDNEQEKLKGKGVVVAGSVYAKKEEENLENENEEVTVETTKIDSDVQN
MXFT_Contig88850MXFT_01142710F045477TISEQGYSLDETDIIPFGFFKQLVNGMNYRILCAVKEKSSNTPTIYDINFHKSNSEMKMIYAKNPEDSGKKLSDKDKKKLETAIIKYYFEKLYKVKELDIQYEYHNFDGLNEYAVYDVIAELGNEKEKVSKRMLVIYRNDKTFTVETELIAKE
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