NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2100351007

2100351007: Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from flow sorted aerobic plus nitrate



Overview

Basic Information
IMG/M Taxon OID2100351007 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0060820 | Gp0051556 | Ga0026451
Sample NameSediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from flow sorted aerobic plus nitrate
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size386453037
Sequencing Scaffolds19
Novel Protein Genes21
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → PVC group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → lake sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationLake Washington, Seattle
CoordinatesLat. (o)47.676484Long. (o)-122.228394Alt. (m)N/ADepth (m)62
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000388Metagenome / Metatranscriptome1201Y
F011397Metagenome / Metatranscriptome291Y
F013721Metagenome / Metatranscriptome269Y
F016655Metagenome / Metatranscriptome245Y
F024131Metagenome207Y
F029974Metagenome186Y
F035311Metagenome / Metatranscriptome172Y
F037593Metagenome / Metatranscriptome167Y
F038592Metagenome165Y
F041762Metagenome / Metatranscriptome159Y
F042757Metagenome157Y
F043257Metagenome / Metatranscriptome156Y
F048134Metagenome / Metatranscriptome148Y
F055595Metagenome / Metatranscriptome138Y
F079376Metagenome / Metatranscriptome116Y
F085861Metagenome / Metatranscriptome111Y
F092927Metagenome107Y
F095132Metagenome / Metatranscriptome105N
F095140Metagenome105Y
F103138Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
LWFCAn_contig03582Not Available754Open in IMG/M
LWFCAn_contig04682Not Available667Open in IMG/M
LWFCAn_contig07479All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage537Open in IMG/M
LWFCAn_GLO1YSU01CN29WNot Available526Open in IMG/M
LWFCAn_GLO1YSU01COPEGAll Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage504Open in IMG/M
LWFCAn_GLO1YSU01DB4Q8All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage550Open in IMG/M
LWFCAn_GLO1YSU01DCYGONot Available527Open in IMG/M
LWFCAn_GLO1YSU01DUTUSAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia535Open in IMG/M
LWFCAn_GLO1YSU01DWJMENot Available508Open in IMG/M
LWFCAn_GLO1YSU01EAA37All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → unclassified Clavibacter → Clavibacter sp.506Open in IMG/M
LWFCAn_GLO1YSU01EGFLQAll Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium520Open in IMG/M
LWFCAn_GLO1YSU01EQ4U2Not Available511Open in IMG/M
LWFCAn_GLQU6AQ01B9XZPAll Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium509Open in IMG/M
LWFCAn_GLQU6AQ01BJ4T0All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage522Open in IMG/M
LWFCAn_GLQU6AQ01C70B9All Organisms → cellular organisms → Bacteria505Open in IMG/M
LWFCAn_GLQU6AQ01D3NPLNot Available501Open in IMG/M
LWFCAn_GLQU6AQ01DITAKNot Available512Open in IMG/M
LWFCAn_GLQU6AQ01ERH44All Organisms → cellular organisms → Bacteria → PVC group506Open in IMG/M
LWFCAn_GLQU6AQ01EVJC0Not Available535Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
LWFCAn_contig03582LWFCAn_05720900F042757VLETTPQGQAADAQFVKWLMDHQKEAGVFSAVSTLVDSTVDNPAAKQAAQGILQRLQRAEQARPVAAS
LWFCAn_contig04682LWFCAn_06901940F079376MSDIMITRQPGRPCVSLAAKRVCRTTEEGGRQMRHRESDSLIVPVKAGNAAGGKEATHGSVV
LWFCAn_contig07479LWFCAn_04495840F095140MNTKNLAGYGSIIMSLLTALAAAPYTLGEVATIIPPDWKAKVFVVSAIATLLLRVIRDNTTPPQPTP
LWFCAn_GLO1YSU01BNDXHLWFCAn_07243600F055595MPRLSRQKLARLREIERNFHVRKFGEELARVNLDMTQEERHRYLDWMRETARRQGVPASPAIPVAWMLKLEEELTRNPVD
LWFCAn_GLO1YSU01CN29WLWFCAn_00293010F000388MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVRELKDAKD
LWFCAn_GLO1YSU01COPEGLWFCAn_10197340F038592MLWIDPLSDDGQELIDDRINQLIKTDYKPANLVNEAVAEFTVRENQQVADYVNENNMTGLGNYIYLKTYDFAYALATKQAEYEFHNGELNDE
LWFCAn_GLO1YSU01DB4Q8LWFCAn_09910450F035311FVIINREGEVYTGLIGGYTQWSYDWKQAKPLHVENTTRLLEENIGAELINEEEII
LWFCAn_GLO1YSU01DCYGOLWFCAn_04762900F024131MELPQEGKYVCKLNGQLVIYEASTGSLCGAVPCVMVDSGFTFKHTLVLVKADGTIQTKTTDTLKAVFGWDGVDPFWLMDNSVEGGPMRDTDFEIVGGPETGDKGGQYFKSQWLNPLGGGMKTPAAADRRSVLAKYGTKFQALAGAGG
LWFCAn_GLO1YSU01DUTUSLWFCAn_04773480F013721MKDWDTITVSKVGQSTLPKWWRDASGLSQGGVVEVRPLRDSTNSIVLTPRPSKRSGAVGLLGQFANCPNPIPPPDRHRLPFK
LWFCAn_GLO1YSU01DWJMELWFCAn_06671230F016655MLQFGGKNAKKTSSTTKRHFTVVMGNKEHGLYVSSTPSSAARKAVTKLCTANKSKKVEFHIREITQGSKKKTYGPYEGYIEKLKEPIELKGRVIKYKPVAKLSGKTGVEKGGMRGGAKSIVIN
LWFCAn_GLO1YSU01EAA37LWFCAn_06500780F095132HGQTAPLRALDWGVNAVRPQSSDSQQEGNYNPLGLGGQIGGLAAFPLLLNHQKTLAR
LWFCAn_GLO1YSU01EGFLQLWFCAn_09494450F085861KMITITRKQERRRTMSVEQEVYNNKGPMCCRSWGHHRNPALRMKFGILLVTIGLIWLGARVGLLDLSWLHAAHFWPSVFILLGAWAVYKGFMRRKSETINKEKKEV
LWFCAn_GLO1YSU01EQ4U2LWFCAn_06062320F011397MKDFELLKRTYPTSEFDRPCDGYDYIMKNSTEVERLEWGIDMNAIQRVIKSGEKYMYQVAKDGEWFRTMYLCFTNYAIIRKYIFKLE
LWFCAn_GLQU6AQ01B3D3FLWFCAn_06137340F037593MDEQMDEQMDERIAQTPLPPIEVHLIVQLMADFINYMGVSLYEGEFTKNHEDSYSTLHSIYDSVATTPSMAPSLYDCAQFYDNIVYLANVTYT
LWFCAn_GLQU6AQ01B9XZPLWFCAn_10314670F085861MSISQEASKNIGNMCCGHWTHQRNPARKMKIGILLVTIGLIWLGARLGLLDFSWLQAVHFWPAVFILLGVWMVYKGFRQRKPRTIDDKTEEV
LWFCAn_GLQU6AQ01BJ4T0LWFCAn_06670790F103138MQGTILLNYSENVKQVEDEEKTRFLRNLLEQMGVPLEDFWETDGALSTDQRIKLRSILATYNILVIDDQDGGLKVYVEKELVGEWFKSTYKLKTDLQQLERKKQLYMEMLVNYWTIFEEQESI
LWFCAn_GLQU6AQ01C70B9LWFCAn_06277190F048134MNTEKMIQINLAIPERCRNLLRRIAAERMMANPDKIESGTSIATELLLAALKEITEKGGL
LWFCAn_GLQU6AQ01D3NPLLWFCAn_08632130F041762VRSIIKYLQAGIKDNKYQWISLNTNWTKQLIQILNKRDKNAWYQVRQLVADSQIDDFQTAYRYMFEHLNEFSYGHDAELSVILDDFIWRSGVVPDKEINFAAAIAKILETTKKQVI
LWFCAn_GLQU6AQ01DITAKLWFCAn_02084190F092927TEKGQAQFPASWRKQAGLMHGGPCDVRVLDDGRQSLLITPRPQKRRGAVGLLAHLEGQSVAFPKVKRHTMPFK
LWFCAn_GLQU6AQ01ERH44LWFCAn_03354530F029974MSGRCGIVGHGKGRSEGLDREKERHRIIESFDVLDVPEDIQALIREALDSNKWDWFRDCDGCTAVSEVYWPTIYFPPCLRHDFDWFTGNGGWESNARFYRIQVAYGMAPIRAGMRFAGVTVAWFAWCKWTH
LWFCAn_GLQU6AQ01EVJC0LWFCAn_06276260F043257IITTMHNIFQRVISVIILAVILTYIAAMKMKCGYCTDIPETGYVTTLSTIILIQVLLFAVFPNQARSFLMSNKWVILILMVINVANIIYLYRFIGKMNESQCRQCSSEWRRTFLYYYSTFVLIIYAINIVMMLAMFPSIFSSVTRHRKH
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