Basic Information | |
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IMG/M Taxon OID | 2124908010 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046820 | Gp0052284 | Ga0010961 |
Sample Name | Keratinized_gingiva_contig300 |
Sequencing Status | Permanent Draft |
Sequencing Center | Los Alamos National Laboratory |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 87500670 |
Sequencing Scaffolds | 29 |
Novel Protein Genes | 32 |
Associated Families | 26 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 10 |
All Organisms → Viruses → Predicted Viral | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 3 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella anatipestifer | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 3 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10 | 1 |
Not Available | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Keratinized Gingiva Microbial Communities From Saint Louis, Missouri, Usa |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Keratinized Gingiva → Keratinized Gingiva Microbial Communities From Saint Louis, Missouri, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | St. Louis, MO | |||||||
Coordinates | Lat. (o) | 38.646 | Long. (o) | -90.224 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F018385 | Metagenome | 235 | Y |
F027205 | Metagenome | 195 | N |
F030786 | Metagenome | 184 | N |
F036281 | Metagenome | 170 | N |
F040685 | Metagenome | 161 | N |
F047127 | Metagenome | 150 | N |
F049707 | Metagenome | 146 | N |
F054111 | Metagenome | 140 | N |
F058221 | Metagenome | 135 | N |
F059076 | Metagenome | 134 | N |
F061927 | Metagenome | 131 | N |
F063777 | Metagenome | 129 | N |
F067847 | Metagenome | 125 | N |
F071327 | Metagenome | 122 | N |
F071329 | Metagenome | 122 | N |
F081456 | Metagenome | 114 | N |
F089056 | Metagenome | 109 | N |
F090517 | Metagenome | 108 | N |
F095632 | Metagenome | 105 | N |
F097490 | Metagenome | 104 | N |
F097525 | Metagenome | 104 | N |
F101358 | Metagenome | 102 | Y |
F101359 | Metagenome | 102 | N |
F101360 | Metagenome | 102 | N |
F103434 | Metagenome | 101 | N |
F105378 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
kg300_1588258 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 2434 | Open in IMG/M |
kg300_2254205 | All Organisms → cellular organisms → Bacteria | 2236 | Open in IMG/M |
kg300_3187820 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 658 | Open in IMG/M |
kg300_3253587 | All Organisms → Viruses → Predicted Viral | 1660 | Open in IMG/M |
kg300_3255450 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1026 | Open in IMG/M |
kg300_3257737 | All Organisms → Viruses → Predicted Viral | 2878 | Open in IMG/M |
kg300_3264045 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2217 | Open in IMG/M |
kg300_3264576 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella anatipestifer | 9684 | Open in IMG/M |
kg300_3268304 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 528 | Open in IMG/M |
kg300_3269143 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 3581 | Open in IMG/M |
kg300_3270362 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 43332 | Open in IMG/M |
kg300_3272596 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1452 | Open in IMG/M |
kg300_3272993 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 800 | Open in IMG/M |
kg300_3273323 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 800 | Open in IMG/M |
kg300_3274471 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium | 921 | Open in IMG/M |
kg300_3276207 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 528 | Open in IMG/M |
kg300_3280911 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1676 | Open in IMG/M |
kg300_3280912 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1912 | Open in IMG/M |
kg300_3281692 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 568 | Open in IMG/M |
kg300_3287435 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 27344 | Open in IMG/M |
kg300_3290032 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1576 | Open in IMG/M |
kg300_3291177 | All Organisms → cellular organisms → Bacteria | 1102 | Open in IMG/M |
kg300_3295148 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1139 | Open in IMG/M |
kg300_3306713 | All Organisms → cellular organisms → Bacteria | 2479 | Open in IMG/M |
kg300_3306841 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 9409 | Open in IMG/M |
kg300_3311322 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 2033 | Open in IMG/M |
kg300_3311627 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10 | 5818 | Open in IMG/M |
kg300_52439 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 874 | Open in IMG/M |
kg300_910816 | Not Available | 2248 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
kg300_1588258 | kg300_00364050 | F103434 | VVEVTLAVIKEGRTGRRFERGETFMIDKVLVQPSAGNALKATENRDIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEPLTYDASPMTHHFSVRCDTLGTESR |
kg300_2254205 | kg300_01145080 | F089056 | SKRKEADNTMVLEKNHAFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ |
kg300_3187820 | kg300_01067680 | F101360 | ASQEKKKALKELEEYMAPGDTSKPMIDGMQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRDLISTGDISLLMIEGGDA |
kg300_3253587 | kg300_00902610 | F067847 | MFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQVKEDGKFAEVEEKIKEAELNSL |
kg300_3255450 | kg300_01329300 | F097490 | MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM |
kg300_3257737 | kg300_00702520 | F027205 | VASRLIVSADDILRAVKESEEFERKALVEAQKRDRAAGKKPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK |
kg300_3264045 | kg300_01281010 | F071329 | MRPLYSKGILMLPVAKIIISGLSSIGAGMIASRLTKPIVSNSNGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEASTHIEIED |
kg300_3264045 | kg300_01281020 | F018385 | MMAEHVNRWDPYAEVPIETHRDPVKDDQLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNDLVFMPDSGRKIITQLFEKEVK |
kg300_3264576 | kg300_00272320 | F071327 | MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALAAALLFEYAYPWRIIFG |
kg300_3268304 | kg300_01197320 | F054111 | MNKSLESITHEEFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTLKIKWDLDYGLFLETESLSTSDKDLFLNILHKVILSL |
kg300_3269143 | kg300_00524540 | F047127 | MKKTFAFILLSIISLAKAQQTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDTDIREILEKYNSK |
kg300_3269143 | kg300_00524570 | F040685 | MKKLLFKLFFALAFASISLHGQEKIQQVEFNSFGGMALYSSQYTLNSLKKEFSAKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLKIIAKEFGKKGIYE |
kg300_3270362 | kg300_00323090 | F049707 | VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDSEKKTS |
kg300_3270362 | kg300_00323300 | F095632 | MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSVKTPQTN |
kg300_3272596 | kg300_01194380 | F101359 | MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGISENISFEVNKGFKSFIEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK |
kg300_3272993 | kg300_00024940 | F081456 | KGAHMFEEPPIYYVLISLIFLIVFFAISFATWLVWLTNVAFFVKLVITAIGALFAAMTVILYTISAE |
kg300_3273323 | kg300_00387400 | F081456 | KGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVALFVKLVITAIGALFAAMTVILYTISAE |
kg300_3274471 | kg300_00075130 | F101358 | MTEKYSASLPPRQPEHLLTQPITTDGMPQERTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE |
kg300_3276207 | kg300_00355230 | F054111 | MNKSLESITHEEFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ |
kg300_3280911 | kg300_00734930 | F018385 | MAEYVNQWESYKELSIENDRDPVLDNPIIYGVNVKHFTLTVYSPEGRVNKYWNARILKDQVGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRMNSRLPSTLWNTKEVN |
kg300_3280912 | kg300_00737670 | F018385 | LRGLHPWSLTDTSGTETTMAEYVNQWESYKELSIENDRDPVLDNPIIYGVNVKHFTLTVYSPEGRVNKYWNARILKDQVGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRMNSRLPSTLWNTKEVN |
kg300_3281692 | kg300_01332110 | F090517 | MNRRILSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEYKNAKRDSYSVYLNFLSDSEVEVSAYASKDPTASYYEQARYYYTVTDRIFTLKTQVDYELNPPIDKNTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL |
kg300_3287435 | kg300_00532030 | F103434 | VVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR |
kg300_3290032 | kg300_01201520 | F059076 | MTNKILLLGLLLKVASINAQAINETNAAGKTGQKVGINTTIPTRTLTIKNAAANDGKPLLRLVDAPIYSKNIGSAMDADLGGNTATATNYTDYRPLMVDKVGDVYRGLPINNMSVLTLTISNVKGDWISEFDTGINYNKYAVAIMSYSFILPPYGPGNAVMLRGSFNTPNVIHGNGKHSVTTTPAFVILKKTGENWGIHADYPNLGPHEFTTGSTDLGPEVNGTWVITLLVGKKDAVNFTELRFSQDGKTTGQGTKDNAYKVGLENFLKKLE |
kg300_3291177 | kg300_00849930 | F061927 | MKNSIFILSAMFIVGACSSDSAQKVTEKIKNTYSDSLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE |
kg300_3295148 | kg300_00448820 | F097525 | MQQKKIMFKIQNAYQKIIFSIHGHRDRKENFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFPLDDKTLAMIIKELGEAVASFKKV |
kg300_3306713 | kg300_00518050 | F030786 | MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGTKKISLEDITGGDDSETGVLKVKYFDDEGADKIFENNNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC |
kg300_3306841 | kg300_00658340 | F101360 | MSKEDALRRAAVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQVGTVSVSAPAPKYQVVDERALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISTAQADAIQELIASGDIRMIEVGGD |
kg300_3311322 | kg300_00994190 | F063777 | LKVLNIKISALPPENNSFWMKLLFYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYILYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKMRVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE |
kg300_3311627 | kg300_01420160 | F058221 | MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI |
kg300_52439 | kg300_00663550 | F036281 | MITLIKVDEGPVDIHELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSYKEYFDYWTAREGRPAPFFYESRQYHVKSFMRVPGMPELLITAEREKDHWYTFRLSDGLKSKFTRHTITNEKGHQSYDWVLKNAQWELDTIRYF |
kg300_910816 | kg300_01111700 | F105378 | MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNQNGEFVRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR |
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