Sample 2149837016

Basic Information
IMG/M Taxon OID	2149837016 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0047181 \| Gp0052353 \| Ga0010875
Sample Name	Human fecal microbial communities from the University of Arizona (HMP) - Ef2
Sequencing Status	Permanent Draft
Sequencing Center	Chinese National Human Genome Center, Beijing
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

2149837016 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0047181 | Gp0052353 | Ga0010875

Sample Name

Human fecal microbial communities from the University of Arizona (HMP) - Ef2

Sequencing Status

Permanent Draft

Sequencing Center

Chinese National Human Genome Center, Beijing

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	18465818
Sequencing Scaffolds	14
Novel Protein Genes	19
Associated Families	19

Dataset Contents

Total Genome Size

18465818

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Ecosystem Assignment (GOLD)

Name

Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal distal gut

Location Information
Location	Bording, Denmark
Coordinates	Lat. (^o)	56.13	Long. (^o)	9.24	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Bording, Denmark

Coordinates

Lat. (^o)

56.13

Long. (^o)

9.24

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F066905	Metagenome	126	Y
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F098313	Metagenome	104	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
STU__NODE_10776_len_2069_cov_14_374094	Not Available	2097	Open in IMG/M
STU__NODE_11212_len_2985_cov_18_628475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3013	Open in IMG/M
STU__NODE_18523_len_3547_cov_9_899351	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3575	Open in IMG/M
STU__NODE_1879_len_6364_cov_13_898020	Not Available	6392	Open in IMG/M
STU__NODE_1939_len_13995_cov_13_214219	Not Available	14023	Open in IMG/M
STU__NODE_2197_len_11329_cov_12_405419	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	11357	Open in IMG/M
STU__NODE_28_len_8501_cov_13_609575	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	8529	Open in IMG/M
STU__NODE_3582_len_7289_cov_13_320621	Not Available	7317	Open in IMG/M
STU__NODE_5655_len_13821_cov_12_132407	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	13849	Open in IMG/M
STU__NODE_6035_len_7745_cov_12_298128	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	7773	Open in IMG/M
STU__NODE_6857_len_16142_cov_12_795998	Not Available	16170	Open in IMG/M
STU__NODE_7413_len_7696_cov_18_301455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	7724	Open in IMG/M
STU__NODE_755_len_2416_cov_21_188742	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2444	Open in IMG/M
STU__NODE_988_len_4117_cov_12_632257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4145	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
STU__NODE_10776_len_2069_cov_14_374094	STU_0545.00000590	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPSFEVDKINPNITDFYFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAVHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAAYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
STU__NODE_11212_len_2985_cov_18_628475	STU_0860.00000380	F039198	MKLTIAEIQGTKYVQIYLTEDELQKNETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC
STU__NODE_18523_len_3547_cov_9_899351	STU_0766.00000660	F080673	MDEIMELQDEALLYLRDNITKDEAYYILTTDKEMLAILIADKKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGINMYFRRQDANAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL
STU__NODE_18523_len_3547_cov_9_899351	STU_0766.00000710	F078006	MDNILKRAAAELREAGCRVFAWQDDTYNRSWSKGDYIMLYYAFPDSPNIGYLSRGEYGMSVAYSRAYIPSRGSGSGCCIKEEATFDLATALDALNGPLPRWCKAYGVYPKQYDNIDKWYNSDNYNKKLFKEI
STU__NODE_1879_len_6364_cov_13_898020	STU_0630.00000030	F058555	MGTKIRFLHIMKSNFDKILTERYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVSKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRRTANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGTIMHIIIAEYFIKDVFLGVKGVEMSKAG
STU__NODE_1939_len_13995_cov_13_214219	STU_0678.00000340	F089592	MKKILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFIDALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFEEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKKVKDVKKKEDVDEGGKVNTEE
STU__NODE_1939_len_13995_cov_13_214219	STU_0678.00000350	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLKEVSHIDDPESTSFGLPDDYLWFSNIKGAFSYKGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFR
STU__NODE_2197_len_11329_cov_12_405419	STU_0901.00000410	F076653	MTRNRLMTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDIPSVLQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTSLFDRMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNRSLSGGGELFGANLACMVCDRKDIDWEALRFWLEKYDDPTDKGMVNSPIQFMYLYLYYTFNK
STU__NODE_28_len_8501_cov_13_609575	STU_0028.00000030	F083452	MSGRVKIKIKDKKPKIDVFKVIESRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
STU__NODE_28_len_8501_cov_13_609575	STU_0028.00000060	F102167	MDINQIKKYLPLGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK
STU__NODE_3582_len_7289_cov_13_320621	STU_0033.00000300	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLIVLLIVLIANFLARLAQSIRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFNRINVFKMFGFSKNIPDETFDDIRRIADDEVKDKS
STU__NODE_3582_len_7289_cov_13_320621	STU_0033.00000310	F075481	MRLRISLRAIFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTRERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
STU__NODE_3582_len_7289_cov_13_320621	STU_0033.00000360	F106193	MMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILNGRAEHIKP
STU__NODE_5655_len_13821_cov_12_132407	STU_0684.00000390	F078005	MKKSEFVKELEKIIDMIKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMDLTVEANTMASMNDRTFACLMSEVYKQKFTKAITMSEDDDDEDN
STU__NODE_6035_len_7745_cov_12_298128	STU_0991.00000180	F098313	VNLINKINNFSNVREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD
STU__NODE_6857_len_16142_cov_12_795998	STU_0620.00000210	F050794	MMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
STU__NODE_7413_len_7696_cov_18_301455	STU_0031.00000480	F066905	MPEESRDCGCGRNNNCLSNLFGGCGCGDSSILFFIIIFLLLFCNCGCNR
STU__NODE_755_len_2416_cov_21_188742	STU_0658.00000020	F057001	MISKEINKVQNEVKKSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPVEYDFGIYYETFNGADKRIIKCAVPIKRYTFSLIAKCVTYYLTHPKNER
STU__NODE_988_len_4117_cov_12_632257	STU_0867.00000060	F083451	MDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2149837016: Human fecal microbial communities from the University of Arizona (HMP) - Ef2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences