NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 2149837019

2149837019: Human fecal microbial communities from the University of Arizona (HMP) - Em2



Overview

Basic Information
IMG/M Taxon OID2149837019 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047181 | Gp0052401 | Ga0010879
Sample NameHuman fecal microbial communities from the University of Arizona (HMP) - Em2
Sequencing StatusPermanent Draft
Sequencing CenterChinese National Human Genome Center, Beijing
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24499042
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From The University Of Arizona, For Hmp Training
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationBording, Denmark
CoordinatesLat. (o)56.13Long. (o)9.24Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051935Metagenome143N
F068941Metagenome124N
F070133Metagenome123N
F072366Metagenome121N
F078004Metagenome117N
F101192Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
STU__NODE_16412_len_683_cov_13_819912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes711Open in IMG/M
STU__NODE_1904_len_1185_cov_8_745992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1213Open in IMG/M
STU__NODE_4744_len_1130_cov_14_295575All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1158Open in IMG/M
STU__NODE_6939_len_735_cov_13_976871All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales763Open in IMG/M
STU__NODE_8837_len_726_cov_10_209367All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales754Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
STU__NODE_10987_len_868_cov_9_267282STU_0011.00000590F078004GGLSAVAGSATLDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGAVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
STU__NODE_16412_len_683_cov_13_819912STU_0078.00000520F068941NNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMELTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
STU__NODE_1904_len_1185_cov_8_745992STU_0635.00000100F101192LLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSFTPCGEDTIRRWVSGRYQIALRFNRYDICLGVEEEIDG
STU__NODE_4744_len_1130_cov_14_295575STU_0061.00000460F070133TGAQASTDNVSMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLTLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
STU__NODE_6939_len_735_cov_13_976871STU_0856.00000310F051935TLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDSTYIYFDFVDENQTEWELVLNLSTVYVSYFRMIYNAEGYGTTEIVFNYDHGMKFQFDAPFYFRLSYDVDPAERYSFVVEDFDLATCPLSMQDFFVPAVVSCGEEGAGLYIMAKQGIRPILVLADGEMIEAIPQKEKLDWTIVYYQGNYLFIETENCKMEE
STU__NODE_8837_len_726_cov_10_209367STU_0351.00000620F072366QQGKRLPVYRYLREAWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRTKKRFLWQICYYVNTWATFYYIFGREITQENVEQWKKTLFKEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSYFDDAMTWYRDNGRKLLEAENKTNN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.