Sample 2156126005

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 2156126005

2156126005: Marine Trichodesmium cyanobacterial communities from the Bermuda Atlantic Time-Series

Overview

Basic Information
IMG/M Taxon OID	2156126005 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0064468 \| Gp0052361 \| Ga0026255
Sample Name	Marine Trichodesmium cyanobacterial communities from the Bermuda Atlantic Time-Series
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	131475334
Sequencing Scaffolds	3
Novel Protein Genes	3
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Trichodesmium Cyanobacterial Communities From The Bermuda Atlantic Time-Series
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Trichodesmium Cyanobacterial Communities From The Bermuda Atlantic Time-Series

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Atlantic Ocean
Coordinates	Lat. (^o)	25.5	Long. (^o)	-67.3	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032301	Metagenome / Metatranscriptome	180	N
F047103	Metagenome / Metatranscriptome	150	Y
F059484	Metagenome / Metatranscriptome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
TCCM__contig04018	All Organisms → cellular organisms → Eukaryota	961	Open in IMG/M
TCCM__contig04349	All Organisms → cellular organisms → Eukaryota	912	Open in IMG/M
TCCM__contig06489	All Organisms → cellular organisms → Eukaryota	684	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
TCCM__contig04018	TCCM_0018.00000590	F047103	MHILDQIWPFLGPKILIFMGVSKSFGTNITENHFGNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
TCCM__contig04349	TCCM_0349.00000250	F032301	VASKLSPQQADGFFYQSDMKIREKGKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCCNRRYGHTFQNSA
TCCM__contig06489	TCCM_0489.00000460	F059484	VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSEYVYERWVQQIFDHVLVARSWVSAKKWGPLAKLLGVTKKCISQNLRI

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