NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2199352032

2199352032: Cave microbial community (Speleothem A)



Overview

Basic Information
IMG/M Taxon OID2199352032 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047522 | Gp0053600 | Ga0011322
Sample NameCave microbial community (Speleothem A)
Sequencing StatusPermanent Draft
Sequencing CenterArizona Genomics Institute
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size168969099
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales1
Not Available2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSpeleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → cave wall → rock
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Arizona
CoordinatesLat. (o)31.837801Long. (o)-110.350292Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000195Metagenome / Metatranscriptome1659Y
F003218Metagenome / Metatranscriptome500Y
F009825Metagenome312Y
F020728Metagenome222Y
F020970Metagenome / Metatranscriptome221Y
F021079Metagenome / Metatranscriptome220Y
F030702Metagenome / Metatranscriptome184Y
F038432Metagenome / Metatranscriptome166Y
F038611Metagenome / Metatranscriptome165Y
F043266Metagenome / Metatranscriptome156Y
F045594Metagenome152Y
F069895Metagenome / Metatranscriptome123Y
F082936Metagenome113Y
F091062Metagenome / Metatranscriptome108Y
F105116Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
2206354496All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium504Open in IMG/M
2206370596All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium502Open in IMG/M
2206378124All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium502Open in IMG/M
2206400340All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia500Open in IMG/M
2206401158All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium500Open in IMG/M
2206581106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium532Open in IMG/M
2206612469All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales524Open in IMG/M
2206650217Not Available518Open in IMG/M
2206655768All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia517Open in IMG/M
2206656097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium517Open in IMG/M
2206665797Not Available516Open in IMG/M
2206694672All Organisms → cellular organisms → Bacteria512Open in IMG/M
2206758276All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
22063544962208047168F003218RTYARSRFPRCDPRLRRRSGHRLGRRREGLFEDTIPRGKSSSVTFTVHRAASFRIVLRVPTQGRAKLFLLGKTAPRGGPLIDTKTYACEGAAGSFYCRAAYEPLPRGTYTWRISWSGRTAAHVELTVRW
22063705962208067062F021079MVIQVLLAADDREAGATTVSTTIEVNTGDPCWPTWLVEAVTYQAQEGARRLRDQLVTQHAISGDGFVPLAAVVPAAGAGASPVLGRLPAAPGSPPP
22063781242208076460F020970IGDTNERANGTAVLKIEYSDGKAGVLTVGCHGPGAPPGIFEGIAVTKGFTTYYAVQPPAAGVDANRTLFHVRR
22064003402208103719F038611LAWMRMMGADSVAYHKATVLGRADDFPGQALDYYASRGETPLVWGGACVSGWAWWVG
22064011582208104713F045594VTDDPAERIRTLLPRGDNLLKSGRLERVGRAIEAFEEARGIAAHDAVDPRVRELVERRLAAVRALAGEDDAHTDQS
22065811062208281903F038432MLACASTVSAARADSPAAKKRIVREWSMRLNAYDNVGAAKLFARPATFVQSGYVFQFDSTANIVLWHRRLPCAGRIVSITVKGEYATAVFVLRNGKHRRCDAPGVKAAAVFRIRAGKILTWAQVSVPGPPGPIA
22066124692208323757F082936KGYVVHGEMAYQAWIHGFRLGEVPIHFRNRRREASKLTTEEIYMALINFALLRFRYGFRPRQRVSTQVAP
22066424642208363188F020728MFILLWGVGILNYTDAAQTIYLLNVKFMVEANRFMAFLLDHSPYVFWMYKTLVPTLGCVLLWRFRKQVKWLPGAVITVFAVYLTVV
22066502172208373197F091062MAILTPEEKEFLDVFLYEATTSPFFNGPATKALYAIGVEYRDISYIAWAYEQEVPRTSFELGHSAEVAPPLPWISRESVLRRNLEIQCIWEQERKPVGHAQCSLSGGQAGP
22066557682208380425F069895TFRIPRESFDIPGMGERLTADNLLKAVGIATEEVQSWRHEGASRSGNEPHSELGHPLPPPPQDVTHLNLYVSLKPPPRAVAPNESCEPEVPEAKWQGLEARWNAILGLEASMDTLRISMEALRAEMEASSRRTLTPDEKYHALNADVAQWNKAKSRVHYALPKVREFIHRST
22066560972208381129F105116MTCPKCGTEMNHQAEKLVYPVTAAEAERMTAALDGVIENVFACPGCGWVDSWREPGVPAAPR
22066657972208393624F030702MSALDTKLGRRQVLKGLMIAGPTLAIAGRLGFADGAGAFPTKTDELPDAQDFTDIFILSQQPTIYDLKIEIRPDN
22066946722208430893F009825LVAACQRIDSTFPLVHISTWEGGAYMAAKDAALLMTLREAEMILVSFDRATLPHHAGVATREGLGNAGVVLFRRVVSTTAYGKQARLLVAFWREAHAWDWADRIEYLPRP
22067082682208448203F000195VSRQQFDAIGGAKHLPDVLERVLDRAKASGDGYVLHLTYEEATALNELCSWNVHTDAGGAVTPESRVYDDLVKAIMTHPDY
22067582762208511211F043266MKCSFCEQPLVCQACRHPFHPRRGETHVAAFQPDMQVNCPECQQPLVCKACGYVYGH
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