NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2228664000

2228664000: Panchlora_midgut_metagenome



Overview

Basic Information
IMG/M Taxon OID2228664000 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046786 | Gp0051899 | Ga0026011
Sample NamePanchlora_midgut_metagenome
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size1005314116
Sequencing Scaffolds9
Novel Protein Genes13
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Phasmatodea → Timematodea → Timematoidea → Timematidae → Timema → Timema tahoe1
Not Available3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePanchlora Sp. Gut Microbial Communities From Gamboa, Panama
TypeHost-Associated
TaxonomyHost-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Panchlora Sp. Gut → Panchlora Sp. Gut Microbial Communities From Gamboa, Panama

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationPanama
CoordinatesLat. (o)9.116667Long. (o)-79.7Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000153Metagenome1895Y
F005709Metagenome392Y
F014156Metagenome265Y
F016016Metagenome250Y
F023128Metagenome211Y
F030633Metagenome184N
F038460Metagenome166N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
2228747629All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda966Open in IMG/M
2228798801All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda822Open in IMG/M
2228828852All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Phasmatodea → Timematodea → Timematoidea → Timematidae → Timema → Timema tahoe765Open in IMG/M
2228900837Not Available670Open in IMG/M
2228974018All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta605Open in IMG/M
2229040101Not Available561Open in IMG/M
2229043217Not Available559Open in IMG/M
2229070443All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda544Open in IMG/M
2229135792All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
22287476292228854355F030633MQLIAGSQTQEAIEKKVSLDKSEHYDWNDNQFKHHSDRGFLRMFPTMATPLGEVYGVPRRLL
22287767472228898195F000153MRIIIAKEAFNRKISLLTSKLNIQLRKKLVRCYVWSIT
22287905642228918097F023128MPVVLYGCETWSLTLREKCREIIFENRILRRIFGRMKDEKRE
22287988012228929762F030633VTSDCSPNSRGQAISDKRRHYNCRAKYHSKRGFFGMFPTKATPLGEVCGVPRRLL
22288288522228971491F023128CEAWPLTLREECKLRVFEDWILRRLFEPKRDENGEW
22289008372229066631F038460MDFNNARLHEATLNLHTHA*IFSRLSVMPVDGKQHMSEVVFS
22289500212229128511F000153MRIAIAKEAFNRKKSLLTSKLNTKLRMKLVRCYVWS
22289740182229158100F005709MTIVVKSVLTRDGYCTREIMMRIAIAKEAFNRKISLLTNKLNIELRKKLVRCYVWSIALYGS
22290085972229200015F016016KEAFNRKISLLTSKLNIELGKKLVQCYVWSIALYGSET
22290401012229237242F014156MMVTRSLLDDTVIKQLKWYGHVERMGEKRLSTKQAVTWCSTIKK
22290432172229240920F038460VDFNEARLHEATLTFHTHAWIFSRLSIASVGGKQHLSEVEFSALVGFSLGENTVYWL
22290704432229272847F030633QTQEAIEKKTISDKRGHYDCNDSRAKHRSERGFLRMFPTMATLLGEVCGVPRKPL
22291357922229348053F023128VLYGCEACSIILREERKLRVFENRILRRILGPKGDANGE
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