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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2228664017 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0050523 | Gp0052059 | Ga0011242 |
| Sample Name | Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - sample Oil_dispersant_biofilm |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Alabama State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 55458552 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → oil spill → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Daulphin Laboratory, Alabama, USA | |||||||
| Coordinates | Lat. (o) | 30.15 | Long. (o) | -88.446 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019843 | Metagenome / Metatranscriptome | 227 | Y |
| F020033 | Metagenome / Metatranscriptome | 226 | Y |
| F022392 | Metagenome / Metatranscriptome | 214 | N |
| F081287 | Metagenome | 114 | N |
| F082575 | Metagenome / Metatranscriptome | 113 | Y |
| F101073 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2232465422 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 531 | Open in IMG/M |
| 2232467569 | Not Available | 528 | Open in IMG/M |
| 2232467740 | Not Available | 528 | Open in IMG/M |
| 2232480726 | Not Available | 515 | Open in IMG/M |
| 2232484652 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. | 512 | Open in IMG/M |
| 2232493846 | Not Available | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2232465422 | 2232468987 | F082575 | MQNEQGFDLAGRSIFIALPAYDFKVSLKLAVSLARFAQAAPRHGISLQIGSICGCSVVSRARNLLV |
| 2232467569 | 2232472095 | F101073 | MRYTLCIKGKPDRDYPTLQEAEKAIERELGGFEKINDYLKRNKHVRRSYVCARGKAMV |
| 2232467740 | 2232472335 | F022392 | MTNNNTTKETTMKTYDITYIDPWSNREVRHLDVPQSLLKDVDGETWYTGYNKPIEVITATLVDESRHAAKLSYFNTYGTASE |
| 2232480726 | 2232490953 | F081287 | MNTIKHFHNIAGGFDRITGGMSGLEAEFKYVAPVTDLDKAQIDVMIASAQNLIVAAEALKSVVFEGQPDPV |
| 2232484652 | 2232496478 | F020033 | MKLSPRQIRMMYSHYPDPDPDEDFWPMMGVLAAILLVWTGIIHLLDWLTFDVIPLWAEPFTIAPLIFLVIMKEIYDSINPLHWWPMFWGYRVRLPDDERI |
| 2232493846 | 2232509448 | F019843 | MSGKDKSELVKQIEAYGLKNKLADLARKEEARRPFRHLPKQFSKGILIGNIAIVPK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |