NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2236661024

2236661024: Human oral microbial communities from Stanford University, California, USA - TM7-9 pangenome assembly 1



Overview

Basic Information
IMG/M Taxon OID2236661024 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0051051 | Gp0053577 | Ga0011251
Sample NameHuman oral microbial communities from Stanford University, California, USA - TM7-9 pangenome assembly 1
Sequencing StatusPermanent Draft
Sequencing CenterOak Ridge National Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size10420506
Sequencing Scaffolds3
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Stanford University, California, Usa (12)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral → Human Oral Microbial Communities From Stanford University, California, Usa (12)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationOak Ridge TN
CoordinatesLat. (o)35.92634Long. (o)-84.31646Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066860Metagenome126N
F078842Metagenome116N
F103433Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
TM7x89Draft_c00199All Organisms → cellular organisms → Bacteria165477Open in IMG/M
TM7x89Draft_c00201All Organisms → cellular organisms → Bacteria48863Open in IMG/M
TM7x89Draft_c00836All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1737Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
TM7x89Draft_c00199TM7x89Draft_0019954F078842MIISSIYKTADNDGLIAHIYEHLLAQYVLKYLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNMLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEALKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSASSFCDNLEAALVRCSHNYEQVQLDRDTLNSILGGCVIGDKGWLKIADNTLIGQILKAIEIDIYDI
TM7x89Draft_c00201TM7x89Draft_0020145F103433MIFVMKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARAIAGLSPDDASKIPAYIKRASIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYXXPFLWSMNFSVIGAFXWLALMPGXAXPXAHINGIIFYIPLLLFVYILIGLWADYVVKRTVKYE
TM7x89Draft_c00836TM7x89Draft_008362F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFIYGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE

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